Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015905523.1_cds_XP_016455783.1_49672
CDS Infomation

[gene=LOC107779805] [db_xref=GeneID:107779805] [protein=tip elongation aberrant protein 3-like] [protein_id=XP_016455783.1] [location=join(4306..4508,4761..4866,4964..5139,5261..5387,5485..5599,5790..5878,6923..7006,7134..7478,7928..8446,8547..8606,9020..9100)] [gbkey=CDS]
Sequence

ATGGCCGGAAGATGCTGTATGCGTCGGCGCGTGAGCTTCTCGTGGCGCGCGGGGGCGCGT
GGAGAGGCTGCTGCCGGAGATTTTTCTGGGGTTTGGTCGCCGGACCGTGGTGACTCTTGT
GGTAGTGTTGGATTTTGCACAACACTGACAGAGACAACGCAGACGCAAACAACCTTGAAA
AAGTCGCCGGAAAAAGGCTTCCGACTCCAATGTATCCATTATCAAAAAGAAAGTGTAATA
GTTATTTCTGCACCACGTCTCACCAAGTCCAGTGAAGTAGATTTCTATAATATTTCTCCT
TTACATGAGTTTTGTTTTTTTGTAACTGGCCAATTCAATGGACAGGTTGCGCGTAGTGGT
CATAGTGTTCTTAGAGCAAGCTCAGTTTTGATTTTATTTGGGGGTGAAGATGCAAAGAGG
AGGAAGCTAAATGATCTACACATGTTTGATCTTAAATCCTTGACATGGCTGCCGCTTCAT
TGCACGGGAGCAGGTCCATCACCAAGATCAAACCATGTGGCTGCCCTCTATGATGATAAA
TTGCTCCTGATTTTTGGTGGATCATCAAAGTCTAGGACGTTAAATGACCTGTACACGCTT
GATTTTGAGACGATGGCATGGTCAAGAATTAAAATACGGGGATTCCATCCGTCACCTAGA
GCTGGTTCTTGTGGAGTGCTCTGTGGAACTAAATGGTATATTGCTGGGGGTGGTAGCAGG
AAAAGAAGACATGCCGAGACTCTAATATTTGATGTTCTAAAACTTGAATGGTCTGTTGCT
GTTGCTTCACCAGCATCTTCTATCACAACTAACAAGGGATTCAGCCTCGTCCTTGTGCAG
CATAAGGAAAGGGATTTTCTTGTGGCTTTTGGTGGTTTCAAGAAAGATCCATCAAATGAG
GTTGAGGTACTCATTATGGAAAGAAATGAATTGTCAATGGGTCGCAGATCAAGTTTAAGT
AAAGCTGCTGGGAACTTGCTATATGGGAATCGTTTGGCATCTACTGGGCCTGCTGCTTCT
CAGCCAATTAATGGTACTTCTACCTCCCATGTGGATTCTATAGCGAGACAGAATTTAGCC
TCTGCGGTTGAGCATCATGGCTCTGGCAGAAAATCGTTGTCAGAGTCTTTACTCGTTGAT
CCTAGTTCTGTGTCTGGTAATGTCTCGCTTCGCAAGCAATTTTCCAATGATGAAGACGCC
GGTGCAAAGATACCTAAGACTTCAGGTGATGAAAGTCCTTCACAGGAACAAGGAGCTAAA
CAACTTGACGTAGGCATCAAAACAAGCAGCAGTGGAGGAAAAATTGTTACAGAGGAGATG
TCTACTATTACTGAATCTGGACATTTGCCTAATCATTACAGACAAGCAAGTGGAAACTTT
TTTCAAGACACTGATGATTTTGTCTTCCAAGAAAGTGATTATAAAGCTGGATTAACAGCT
TCATCAGGTGCTTGTCAGCAGTATGAAGCCAAACTTTCTGCCCTAATGAGAAAGAACGAA
ATTCTAGAAGGACAGCTGGCAGCTGCATTGGCTAACCGTGAAGCAGCAGAGAAAAATTTA
TCTTCTGCTCTGAAGAGTAAACAGGACATGGAAAAAAGGATGGGTGACACTGTAAAGGAG
GTGGAGTTGCTTAAAGAAAAGCTAGCTAGTGTTGAATTGGCTCAGGAAGAGGCTAATAGC
TTATCCAACATTGTCCACTCCGATAATGTCAGGCTTGAGCATGATGTGGCTTTCCTCAAG
GCAGTTCTCGATGATACCCAGAAGGAACTGCATACAACAAGGGGAGTCCTTGCTGGAGAA
AGAGCAAGAGCTTTCCAGTTGCAGGTTGAAGTTTTTCATTTAAAACAAAGATTGCAGTCA
CTGGAGAATCGATCTCCAACACCTCGGAAACCATTCCACGTTTAG

Peptide Sequence

PEP ID

XP_016455783.1
PEP Infomation

PREDICTED: tip elongation aberrant protein 3-like [Nicotiana tabacum]
Sequence

MAGRCCMRRRVSFSWRAGARGEAAAGDFSGVWSPDRGDSCGSVGFCTTLTETTQTQTTLK
KSPEKGFRLQCIHYQKESVIVISAPRLTKSSEVDFYNISPLHEFCFFVTGQFNGQVARSG
HSVLRASSVLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHCTGAGPSPRSNHVAALYDDK
LLLIFGGSSKSRTLNDLYTLDFETMAWSRIKIRGFHPSPRAGSCGVLCGTKWYIAGGGSR
KRRHAETLIFDVLKLEWSVAVASPASSITTNKGFSLVLVQHKERDFLVAFGGFKKDPSNE
VEVLIMERNELSMGRRSSLSKAAGNLLYGNRLASTGPAASQPINGTSTSHVDSIARQNLA
SAVEHHGSGRKSLSESLLVDPSSVSGNVSLRKQFSNDEDAGAKIPKTSGDESPSQEQGAK
QLDVGIKTSSSGGKIVTEEMSTITESGHLPNHYRQASGNFFQDTDDFVFQESDYKAGLTA
SSGACQQYEAKLSALMRKNEILEGQLAAALANREAAEKNLSSALKSKQDMEKRMGDTVKE
VELLKEKLASVELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHTTRGVLAGE
RARAFQLQVEVFHLKQRLQSLENRSPTPRKPFHV

Transcript Sequence

Gene sequence data has not been registered.